Startups 101
Pilot Guide: Recommended Financial Stack for Startups

Pilot Guide: Recommended Financial Stack for Startups

Written by 
Pilot Team
August 27, 2021
Pilot Guide: Recommended Financial Stack for Startups

At Pilot, we do the bookkeeping for thousands of startups, so we’ve learned a lot about what systems work well, and what systems don’t. Whether you DIY or have us take the bookkeeping off your plate, this is the “recommended financial stack” we’d encourage you to use – battle-tested by us and our customers.


We recommend: Silicon Valley Bank

  • Startup-friendly, good reporting options, reasonable online interface, reasonable fees
  • Mercury and First Republic are also popular options

Corporate Card

We recommend: Brex

  • Designed for startups
  • No personal guarantee required
  • Super simple to get started
  • Use this link for a Pilot-specific offer: 50,000 points signup bonus and waived card fees for life

Expense Reporting

We recommend: Expensify

  • Inexpensive and flexible
  • Good integration with QuickBooks Online
  • Definitely much better than using a spreadsheet!


We recommend: Gusto

  • The software is modern and delightful
  • Very popular with startups
  • Handles payroll taxes automatically (and helps with benefits and HR)
  • Does a good job of integrating with Quickbooks Online
  • If you’re a Pilot customer (or potential customer), please sign up using this link and we will automatically be granted bookkeeper access

Credit Card Processing

We recommend: Stripe

  • Extremely easy to integrate, reasonable and transparent fees, robust integrations, good subscription support, PCI compliant

Accounting Software

We recommend: Quickbooks Online

  • Industry standard for accountants
  • Good integrations with other providers

AP/AR automation

You likely don’t need this unless you have significant numbers of invoices that you’re generating, or bills that you’re paying, so we generally recommend you hold off on this one for a bit. But when you need it:

We recommend: Bill.com

  • Automatically collects recurring invoices
  • Securely stores customer banking information
  • Will initiate and move money for you
  • Significantly improves the accounts payable process

Cap table management

We recommend: Carta

  • Easy cap table management
  • 409(a) valuation support
  • Employees and investors can accept electronic securities, exercise options, and track vesting schedules
  • Pilot customers can get free access to Carta Launch for early startups using this link


Bookkeeping isn’t your core business—why not offload it to someone who is an expert?

We recommend: Pilot

  • Dedicated account manager and team that does your books every month, so you can focus on your business
  • Experts at scaling, working with companies ranging from pre-seed all the way to Series D
  • Largest startup-focused accounting firm in the US
  • Built on QuickBooks Online, so there’s no lock-in
  • Accrual basis


We have business relationships with many of the service providers above. Our top priority is helping companies set up great systems that serve them well, and we wouldn’t have pursued these business relationships or chosen to recommend these providers if we didn’t think that they were great.

In particular: the founders of Gusto, Stripe, and Carta are investors in Pilot. We participate in partner programs offered by Expensify and Bill.com that allow us to provide discounts on these products to our customers. We participate in partner programs offered by Gusto and Brex that (1) allow us to provide better support to our customers who use these providers and (2) provide incentives to us for referring companies to these providers. We participate in an Intuit partner program which we use to pay for Quickbooks Online for customers that purchase it through us.

For more information on startup finances, check out our ebook, So You've Founded a Tech Startup, that covers everything from setting up a budget to managing business taxes. Also, feel free to contact us to learn more about our startup bookkeeping services.

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