Pilot vs Fondo Bookkeeping: A complete comparison for startups
You might have noticed that we're writing about the difference between our services and a competitor. We've done our best to give them a fair shake because we want you to make an informed decision.
Pilot and Fondo are two providers often evaluated by startup founders. While both offer bookkeeping services tailored to early-stage companies, they differ greatly in terms of reporting quality, accounting methodology, and scalability. In this post, we’ll highlight how their approaches compare and help you determine which one is a better fit for your goals.
Key takeaways
- Bookkeeping approaches vary. Fondo only supports cash-basis bookkeeping, while Pilot supports both cash and accrual, offering greater flexibility for growing companies.
- Software compatibility affects portability. Pilot uses QuickBooks Online, a widely adopted industry standard. Fondo uses proprietary software, which can create challenges if you ever want to switch providers or integrate tools.
- Support structures differ. Both services offer support, but Pilot integrates automation and expert guidance to help reduce manual errors and streamline monthly close.
Fondo vs Pilot: By the numbers
*As of May 2025
What reporting does each bookkeeping provider make available?
Pilot’s offering includes a number of reports that go above and beyond the standard financial statements: the Flux Insights report identifies which transactions drive notable fluctuations in your spending. The Recurring Vendors report lets you discover opportunities to cut non-essential spending. And best of all, you’re not limited to these reports. Our CFO services team can track any of the KPIs of your business in a way that is most helpful to you.
Fondo offers "annual/once-a-year" bookkeeping as an option, but we'd encourage caution here. The gold standard across the industry (at both small and large firms) is a month-end close process with explicit monthly reconciliation, so that you can have confidence in the accuracy of the work. There's a reason that quarterly or once-per-year books haven't been adopted by the industry more generally.
Key differences between Fondo and Pilot
One of the clearest distinctions between Pilot and Fondo lies in the depth and scalability of services each provider offers especially for startups looking beyond just basic bookkeeping.
Pilot is designed as a long-term finance partner, with a comprehensive offering that extends well beyond day-to-day bookkeeping. In addition to core services like tax preparation and R&D credit support, Pilot includes higher-level functions such as strategic finance support, advanced reporting, and broader back-office tools. This allows startups to grow with Pilot from early-stage through post-Series C without the need to bring on additional financial vendors as needs evolve.
Fondo focuses on a narrower service model, offering core bookkeeping, tax prep, and R&D credit support. While this may work for very early-stage companies with simple needs, Fondo’s lack of controller or CFO services, custom reporting, or broader financial support means startups may outgrow the platform as operations become more complex.
Pilot vs Fondo bookkeeping prices
Pricing and packages for both bookkeeping services typically hinge on your company’s monthly expenses. As your expenses grow, so does the complexity of your books and your need for more robust financial support.
Pilot pricing for bookkeeping:
Pilot’s plans start at $499/month. Pricing scales based on monthly expenses and complexity, with higher tiers including support from controllers or CFOs. For pre-revenue companies, Pilot offers a $200/month discount on its Core plan for the first year.
Fondo pricing for bookkeeping:
Fondo’s pricing begins at $599/month and includes core bookkeeping, tax prep, and R&D credit support. They also promote a once-a-year “annual bookkeeping” option, which appeals to some startups focused on minimizing monthly costs.
Why Pilot stands out?
There’s a reason we’re the largest startup-focused accounting firm in the United States. Our customers mention that they enjoy working with Pilot because we’re:
- Scalable. We support teams ranging from two people in a garage that have just raised a pre-seed round all the way to companies with hundreds of employees, and an on-staff VP Finance. No matter your needs, we can grow with you all the way until you’re ready to bring the function fully in-house. In short: we’re the last accounting firm you’ll ever need to hire. (And that’s good, because switching firms can be costly in your scarcest resource: founder time.)
- Experienced. We’re trusted by literally thousands of high-growth startups because we’ve helped countless startups achieve success. We understand the unique challenges that come with scaling your startup, and our team has the expertise you need to reach your goals.
- Comprehensive. Being a Pilot customer doesn’t just mean that your accounting is great. It also means that you’re able to tap into everything Pilot has to offer, whether that’s a call with our founding team, networking with other founders in our Slack group, or getting timely updates and content on what’s happening in the startup ecosystem generally.
Ready to make your bookkeeping decision?
Still deciding between Pilot and Fondo? If you’re looking for a bookkeeping service that grows with you, offers deeper financial guidance, and keeps your data fully accessible, we’d love to connect. Speak to an expert. We’d love to work with you. To talk to an expert on our team and find out what Pilot can do for you, please email us at info@pilot.com.
Supportive bookkeeping resources for decision-makers
Choosing the right bookkeeping service isn’t always black and white, especially if you’re scaling or evaluating multiple vendors. To help you make the most informed decision possible, we’ve pulled together a few resources below that break down bookkeeping needs, comparisons, and best practices:
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